Fedora的specfile：
# of a system package
%global __provides_exclude_from .*/site-packages/.*\\.so
# for quicker test with packages not yet in fedora
%global packager_debug 0
# for quicker fedora-review tests without downloading the main tarball
%global download_tarball 0
# not functional due to missing jar dependencies
%global with_sage3d 0
# use an workaround to match upstream sagemath patched sphinx
%global with_sphinx_hack 1
# sagemath works only with pexpect-2.0
%global with_sage_pexpect 1
# https://bugzilla.redhat.com/show_bug.cgi?id=909510
%global have_lrcalc %{packager_debug}
# Cbc dependency under review is as follow:
# first need coin-or-CoinUtils
# https://bugzilla.redhat.com/show_bug.cgi?id=894585
# then coin-or-Osi (that requires coin-or-CoinUtils)
# https://bugzilla.redhat.com/show_bug.cgi?id=894586
# then coin-or-Clp (that requires coin-or-Osi)
# https://bugzilla.redhat.com/show_bug.cgi?id=894587
# then coin-or-Cgl (that requires coin-or-Clp)
# https://bugzilla.redhat.com/show_bug.cgi?id=894588
# and finally coin-or-Cbc (that requires coin-or-Cgl)
# https://bugzilla.redhat.com/show_bug.cgi?id=894597
# other coin-or-* packages under review are not required by sagemath
# but are required to have the "basic" set of coin-or packages
%global have_coin_or_Cbc %{packager_debug}
# https://bugzilla.redhat.com/show_bug.cgi?id=914936
%ifarch %{ix86} x86_64
%global have_fes %{packager_debug}
%else
%global have_fes 0
%endif
# set to run sage -testall in %%install
%global with_check 0
%global SAGE_TIMEOUT 60
%global SAGE_TIMEOUT_LONG 180
%global conway_polynomials_pkg conway_polynomials-0.4.p0
%global elliptic_curves_pkg elliptic_curves-0.7
%global flintqs_pkg flintqs-20070817.p8
%global graphs_pkg graphs-20120404.p4
%global pexpect_pkg pexpect-2.0.p5
%global polytopes_db_pkg polytopes_db-20120220
%global rubiks_pkg rubiks-20070912.p18
%global sagenb_pkg sagenb-0.10.7.2
%global sagetex_pkg sagetex-2.3.4
%global SAGE_ROOT %{_libdir}/sagemath
%global SAGE_LOCAL %{SAGE_ROOT}/local
%global SAGE_SRC %{SAGE_ROOT}/src
%global SAGE_DOC %{_docdir}/%{name}
%global SAGE_SHARE %{_datadir}/sagemath
%global SAGE_EXTCODE %{SAGE_SHARE}/ext
%global SAGE_PYTHONPATH %{SAGE_ROOT}/site-packages
Name: sagemath
Group: Applications/Engineering
Summary: A free open-source mathematics software system
Version: 5.12
Release: 2%{?dist}
# The file ${SAGE_ROOT}/COPYING.txt is the upstream license breakdown file
# Additionally, every $files section has a comment with the license name
# before files with that license
License: ASL 2.0 and BSD and GPL+ and GPLv2+ and LGPLv2+ and MIT and Public Domain
URL: http://www.sagemath.org
%if %{download_tarball}
Source0: http://boxen.math.washington.edu/home/%{name}/sage-mirror/src/sage-%{version}.tar
%else
Source0: sage-%{version}.tar
%endif
Source1: gprc.expect
Source2: makecmds.sty
# not installed by jmol package, use one in sagemath jmol spkg
Source3: Jmol.js
Source4: JmolHelp.html
# from jmol-12.3.27.p2 spkg
Source5: testjava.sh
# 1. scons ignores most environment variables
# 2. scons 2.2* does not have soname support (expected for scons 2.3*)
# This patch adds some regex substition templates for CFLAGS, etc, and
# minor adaptation from full scons patch at:
# http://scons.tigris.org/nonav/issues/showattachment.cgi/902/soname_func.py
# Discussed at:
# http://scons.tigris.org/issues/show_bug.cgi?id=2869
Patch0: %{name}-scons.patch
# Upstream uses mpir not gmp, but the rpm package is tailored to use gmp
Patch1: %{name}-gmp.patch
# Set of patches to work with system wide packages
Patch2: %{name}-scripts.patch
# Adapt to ntl 6.0.0.
Patch3: %{name}-ntl6.patch
# remove call to not implemented sagemath "is_package_installed" interfaces
# need to package coin-or solver in fedora
# remove check for non free solvers
Patch4: %{name}-extensions.patch
# helper to:
# o respect a DESTDIR environment variable
# o avoid double '//' in pathnames, what can confused debugedit & co
# o minor change to help in incremental builds by avoiding rebuilding
# files
# o do not assume there is an installed sagemath
Patch5: %{name}-rpmbuild.patch
# build documentation in buildroot environment
Patch6: %{name}-sagedoc.patch
# sage notebook rpm and system environment adjustments
Patch7: %{name}-sagenb.patch
# do not attempt to create state files in system directories
Patch8: %{name}-readonly.patch
# force coercion of ecl t_string to ecl t_base_string
# this is hackish and only required if ecl is built with unicode support
Patch9: %{name}-ecl-unicode.patch
# do not link explicitly to png12
Patch10: %{name}-png.patch
# work with all maxima-runtime lisp backend packages
Patch11: %{name}-maxima.patch
# execute 4ti2 programs in $PATH not in $SAGE_ROOT/local/bin
Patch12: %{name}-4ti2.patch
# http://trac.sagemath.org/sage_trac/ticket/12992
# http://pari.math.u-bordeaux.fr/cgi-bin/bugreport.cgi?bug=1317
Patch13: %{name}-pari.patch
# Portuguese translations: http://trac.sagemath.org/sage_trac/ticket/12822
Patch14: trac_12502_pt_translation_of_a_tour_of_sage_rebase1.patch
Patch15: trac_12822_pt_translation_of_tutorial.patch
Patch16: trac_12822_pt_translation_of_tutorial_rev1.patch
# use jmol itself to export preview images
# FIXME besides not using X and told so, fails if DISPLAY is not set
Patch17: %{name}-jmol.patch
# only cremona mini database built and installed
# FIXME add a package with the full cremona database
# FIXME actually it should be already available in pari-elldata
Patch18: %{name}-cremona.patch
# lrslib is a requires
Patch19: %{name}-lrslib.patch
# nauty cannot be packaged due to license restrictions
# http://cs.anu.edu.au/~bdm/nauty/
# http://pallini.di.uniroma1.it/
Patch20: %{name}-nauty.patch
# gap hap package not (yet) available
# http://www-gap.mcs.st-and.ac.uk/Packages/hap.html
Patch21: %{name}-gap-hap.patch
# Patch to enable lrcalc once review request is done in Fedora
Patch22: %{name}-lrcalc.patch
# Patch to enable cbc once review requests are done in Fedora
Patch23: %{name}-cbc.patch
# Use system gap directories
Patch24: %{name}-libgap.patch
# Patch to enable fes once review requests are done in Fedora
Patch25: %{name}-fes.patch
# Get package to build with known problem if not yet updated to pari 2.6.
Patch26: %{name}-nopari2.6.patch
# sagemath 5.8 (optionally) requires cryptominisat 2.9.6 (in >= f19)
# and does not work with cryptominisat 2.9.5 (in f18)
Patch27: %{name}-cryptominisat.patch
# Side effect of using distro packages
# https://bugzilla.redhat.com/show_bug.cgi?id=974769
Patch28: %{name}-sympy.patch
BuildRequires: 4ti2
BuildRequires: atlas-devel
BuildRequires: cddlib-tools
BuildRequires: cliquer-devel
%if %{have_coin_or_Cbc}
BuildRequires: coin-or-Cbc-devel
%endif
BuildRequires: cryptominisat-devel
BuildRequires: Cython
BuildRequires: desktop-file-utils
BuildRequires: dos2unix
BuildRequires: dvipng
BuildRequires: ecl
BuildRequires: eclib-devel
BuildRequires: factory-devel
%if %{have_fes}
BuildRequires: fes-devel
%endif
BuildRequires: flint-devel >= 2.3
BuildRequires: gmp-ecm-devel
BuildRequires: gap
BuildRequires: GAPDoc
BuildRequires: gap-character-tables
BuildRequires: gap-libs
BuildRequires: gap-sonata
BuildRequires: gap-table-of-marks
BuildRequires: gc-devel
BuildRequires: gd-devel
BuildRequires: gfan
BuildRequires: glpk-devel
BuildRequires: gnutls-devel
BuildRequires: gsl-devel
BuildRequires: iml-devel
BuildRequires: L-function-devel
BuildRequires: libfac-devel
BuildRequires: libfplll-devel
BuildRequires: libgap-devel
BuildRequires: libmpc-devel
BuildRequires: linbox-devel
%if %{have_lrcalc}
BuildRequires: lrcalc-devel
%endif
BuildRequires: m4ri-devel
BuildRequires: m4rie-devel
BuildRequires: maxima-runtime-ecl
BuildRequires: mpfi-devel
BuildRequires: ntl-devel
BuildRequires: numpy
BuildRequires: palp
BuildRequires: pari-devel
BuildRequires: pari-gp
BuildRequires: ppl-devel
BuildRequires: pynac-devel
BuildRequires: python2-devel
BuildRequires: python-flask-autoindex
BuildRequires: python-flask-babel
BuildRequires: python-flask-openid
BuildRequires: python-flask-silk
BuildRequires: python-ipython
BuildRequires: python-matplotlib
BuildRequires: python-networkx
BuildRequires: python-sphinx
BuildRequires: python-twisted-web
BuildRequires: python-twisted-web2
BuildRequires: polybori-devel
BuildRequires: R
BuildRequires: ratpoints-devel
BuildRequires: readline-devel
%if 0%{?fedora} > 18
BuildRequires: rpy
%endif
BuildRequires: scons
BuildRequires: Singular-devel
%if 0%{?fedora} >= 18
BuildRequires: stix-math-fonts
%else
BuildRequires: stix-fonts
%endif
BuildRequires: sympow
BuildRequires: sympy
BuildRequires: symmetrica-devel
BuildRequires: texlive
BuildRequires: zn_poly-devel
Requires: 4ti2
Requires: apache-commons-cli
Requires: cddlib-tools
Requires: Cython
Requires: ecl
Requires: firefox
Requires: gap
Requires: GAPDoc
Requires: gap-character-tables
Requires: gap-prim-groups
Requires: gap-small-groups
Requires: gap-sonata
Requires: gap-table-of-marks
Requires: gap-trans-groups
Requires: genus2reduction
Requires: gfan
Requires: gmp-ecm
Requires: jmol
Requires: jsmath-fonts
Requires: lrslib-utils
Requires: maxima-gui
Requires: maxima-runtime-ecl
Requires: palp
Requires: pari-gp
Requires: python-crypto
Requires: python-cvxopt
Requires: python-flask-autoindex
Requires: python-flask-babel
Requires: python-flask-openid
Requires: python-flask-silk
Requires: python-ipython
Requires: python-matplotlib
Requires: python-networkx
Requires: python-polybori
Requires: python-twisted-web
Requires: python-twisted-web2
Requires: python-ZODB3
Requires: R
Requires: rpy
Requires: %{name}-core
Requires: %{name}-data
Requires: %{name}-doc-en
Requires: %{name}-notebook
Requires: %{name}-rubiks
Requires: %{name}-sagetex
Requires: Singular
%if 0%{?fedora} >= 18
Requires: stix-math-fonts
%else
Requires: stix-fonts
%endif
Requires: sympow
Requires: sympy
Requires: tachyon
Requires: texlive
Requires: vecmath
# Missing build requires on armv7hl
ExclusiveArch: %{ix86} x86_64
%description
Sage is a free open-source mathematics software system licensed
under the GPL. It combines the power of many existing open-source
packages into a common Python-based interface.
#------------------------------------------------------------------------
%package core
Summary: Open Source Mathematics Software
Group: Applications/Engineering
Requires: %{name}%{?_isa} = %{version}-%{release}
%description core
This package contains the core sagemath python modules.
#------------------------------------------------------------------------
%package data
Summary: Databases and scripts for %{name}
Group: Applications/Engineering
Requires: %{name} = %{version}-%{release}
Requires: %{name}-data-conway_polynomials = %{version}-%{release}
Requires: %{name}-data-elliptic_curves = %{version}-%{release}
Requires: %{name}-data-extcode = %{version}-%{release}
Requires: %{name}-data-graphs = %{version}-%{release}
Requires: %{name}-data-polytopes_db = %{version}-%{release}
BuildArch: noarch
%description data
Collection of databases and interface customization scripts for sagemath.
#------------------------------------------------------------------------
%package data-conway_polynomials
Summary: Conway Polynomials Database
Group: Applications/Engineering
Requires: %{name}-data = %{version}-%{release}
BuildArch: noarch
%description data-conway_polynomials
Small database of Conway polynomials for sagemath.
#------------------------------------------------------------------------
%package data-elliptic_curves
Summary: Databases of elliptic curves
Group: Applications/Engineering
Requires: %{name}-data = %{version}-%{release}
BuildArch: noarch
%description data-elliptic_curves
Includes two databases:
* A small subset of the data in John Cremona's database of elliptic curves up
to conductor 10000. See http://www.warwick.ac.uk/~masgaj/ftp/data/ or
http://sage.math.washington.edu/cremona/INDEX.html
* William Stein's database of interesting curves
#------------------------------------------------------------------------
%package data-extcode
Summary: Extcode for Sagemath
Group: Applications/Engineering
Requires: %{name}-data = %{version}-%{release}
BuildArch: noarch
%description data-extcode
Collection of scripts and interfaces to sagemath.
#------------------------------------------------------------------------
%package data-graphs
Summary: Sagemath database of graphs
Group: Applications/Engineering
Requires: %{name}-data = %{version}-%{release}
BuildArch: noarch
%description data-graphs
A database of graphs. Created by Emily Kirkman based on the work of Jason
Grout. Since April 2012 it also contains the ISGCI graph database.
#------------------------------------------------------------------------
%package data-polytopes_db
Summary: Lists of 2- and 3-dimensional reflexive polytopes
Group: Applications/Engineering
Requires: %{name}-data = %{version}-%{release}
BuildArch: noarch
%description data-polytopes_db
The list of polygons is quite easy to get and it has been known for a while.
The list of 3-polytopes was originally obtained by Maximilian Kreuzer and
Harald Skarke using their software PALP, which is included into the standard
distribution of Sage. To work with lattice and reflexive polytopes from Sage
you can use sage.geometry.lattice_polytope module, which relies on PALP for
some of its functionality. To get access to the databases of this package, use
ReflexivePolytope and ReflexivePolytopes commands.
#------------------------------------------------------------------------
%package devel
Summary: Development files for %{name}
Group: Development/Libraries
Requires: %{name}%{?_isa} = %{version}-%{release}
%description devel
This package contains the header files and development documentation
for %{name}.
#------------------------------------------------------------------------
%package doc
Summary: Documentation infrastructure files for %{name}
Group: Documentation
BuildArch: noarch
%description doc
This package contains the documentation infrastructure for %{name}.
#------------------------------------------------------------------------
%package doc-de
Summary: German documentation files for %{name}
Group: Documentation
Requires: %{name}-doc = %{version}-%{release}
BuildArch: noarch
%description doc-de
This package contains the German %{name} documentation.
#------------------------------------------------------------------------
%package doc-en
Summary: English documentation files for %{name}
Group: Documentation
Requires: %{name}-doc = %{version}-%{release}
BuildArch: noarch
%description doc-en
This package contains the English %{name} documentation.
#------------------------------------------------------------------------
%package doc-fr
Summary: French documentation files for %{name}
Group: Documentation
Requires: %{name}-doc = %{version}-%{release}
BuildArch: noarch
%description doc-fr
This package contains the French %{name} documentation.
#------------------------------------------------------------------------
%package doc-pt
Summary: Portuguese documentation files for %{name}
Group: Documentation
Requires: %{name}-doc = %{version}-%{release}
BuildArch: noarch
%description doc-pt
This package contains the Portuguese %{name} documentation.
#------------------------------------------------------------------------
%package doc-ru
Summary: Russian documentation files for %{name}
Group: Documentation
Requires: %{name}-doc = %{version}-%{release}
BuildArch: noarch
%description doc-ru
This package contains the Russian %{name} documentation.
#------------------------------------------------------------------------
%package doc-tr
Summary: Turkish documentation files for %{name}
Group: Documentation
Requires: %{name}-doc = %{version}-%{release}
BuildArch: noarch
%description doc-tr
This package contains the Turkish %{name} documentation.
#------------------------------------------------------------------------
%package notebook
Summary: The Sage Notebook
Group: Applications/Engineering
Requires: %{name}%{?_isa} = %{version}-%{release}
%description notebook
The Sage Notebook is a web-based graphical user interface for
mathematical software.
#------------------------------------------------------------------------
%package rubiks
Summary: Several programs for working with Rubik's cubes
Group: Applications/Engineering
Requires: %{name}%{?_isa} = %{version}-%{release}
%description rubiks
Several programs for working with Rubik's cubes, by three different people.
In summary the three contributors are:
Michael Reid (GPL) http://www.math.ucf.edu/~reid/Rubik/optimal_solver.html
optimal - uses many pre-computed tables to find an optimal
solution to the 3x3x3 Rubik's cube
Dik T. Winter (MIT License)
cube - uses Kociemba's algorithm to iteratively find a short
solution to the 3x3x3 Rubik's cube
size222 - solves a 2x2x2 Rubik's cube
Eric Dietz (GPL) http://www.wrongway.org/?rubiksource
cu2 - A fast, non-optimal 2x2x2 solver
cubex - A fast, non-optimal 3x3x3 solver
mcube - A fast, non-optimal 4x4x4 solver
#------------------------------------------------------------------------
%package sagetex
Summary: Sagemath into LaTeX documents
Group: Applications/Engineering
Requires: %{name}%{?_isa} = %{version}-%{release}
%description sagetex
This is the SageTeX package. It allows you to embed code, results of
computations, and plots from the Sage mathematics software suite
(http://sagemath.org) into LaTeX documents.
########################################################################
%prep
%setup -q -n sage-%{version}
mkdir -p spkg/build
pushd spkg/build
for pkg in \
%{conway_polynomials_pkg} \
%{elliptic_curves_pkg} \
extcode-%{version} \
%{flintqs_pkg} \
%{graphs_pkg} \
%if %{with_sage_pexpect}
%{pexpect_pkg} \
%endif
%{polytopes_db_pkg} \
%{rubiks_pkg} \
%{sagenb_pkg} \
%{sagetex_pkg} \
sage-%{version} \
sage_scripts-%{version} \
; do
tar jxf ../standard/$pkg.spkg
done
# apply in spkgs that do not have patches already applied
# or that actually have patches
pushd %{flintqs_pkg}/src
for diff in `ls ../patches/*.patch`; do
patch -p1 < $diff
done
popd
pushd %{sagenb_pkg}/src
tar zxf %{sagenb_pkg}.tar.gz
mv %{sagenb_pkg} sagenb
popd
%if %{with_sage_pexpect}
pushd %{pexpect_pkg}/src
for diff in `ls ../patches/*.patch ../patches/*.diff`; do
patch -p1 < $diff
done
popd
%endif
pushd %{rubiks_pkg}
cp patches/dietz-mcube-Makefile src/dietz/mcube/Makefile
cp patches/dietz-solver-Makefile src/dietz/solver/Makefile
cp patches/dietz-cu2-Makefile src/dietz/cu2/Makefile
cp patches/reid-Makefile src/reid/Makefile
popd
popd
%patch0 -p1
%patch1 -p1
%patch2 -p1
%patch3 -p1
%patch4 -p1
%patch5 -p1
%patch6 -p1
%patch7 -p1
%patch8 -p1
%patch9 -p1
%patch10 -p1
%patch11 -p1
%patch12 -p1
%patch13 -p1
pushd spkg/build/sage-%{version}
mkdir -p doc/pt/a_tour_of_sage/
cp -fa doc/en/a_tour_of_sage/*.png doc/pt/a_tour_of_sage/
%patch14 -p1
%patch15 -p1
%patch16 -p1
popd
%patch17 -p1
%patch18 -p1
%patch19 -p1
%patch20 -p1
%patch21 -p1
%if %{have_lrcalc}
%patch22 -p1
%endif
# other coin-or packages are build requires or coin-or-Cbc
%if %{have_coin_or_Cbc}
%patch23 -p1
%endif
%patch24 -p1
%if %{have_fes}
%patch25 -p1
%endif
%patch26 -p1
%patch27 -p1
%patch28 -p1
sed -e 's|@@SAGE_ROOT@@|%{SAGE_ROOT}|' \
-e 's|@@SAGE_DOC@@|%{SAGE_DOC}|' \
-i spkg/build/sage-%{version}/sage/env.py
#------------------------------------------------------------------------
# ensure proper/preferred libatlas is in linker path
pushd spkg/build/sage-%{version}
perl -pi -e 's|^(extra_link_args = ).*|$1\"-L%{_libdir}/atlas"\]|;' sage/misc/cython.py
# some .c files are not (re)generated
find . \( -name \*.pyx -o -name \*.pxd \) | xargs touch
popd
# remove bundled jar files before build
rm spkg/build/%{sagenb_pkg}/src/sagenb/sagenb/data/sage3d/lib/sage3d.jar
# remove binary egg
rm -r spkg/build/%{sagenb_pkg}/src/sagenb/sagenb.egg-info
###
########################################################################
%build
export CFLAGS="%{optflags}"
export CXXFLAGS="%{optflags}"
export SAGE_ROOT=%{buildroot}%{SAGE_ROOT}
export SAGE_LOCAL=%{buildroot}%{SAGE_LOCAL}
# Avoid buildroot in gcc command line (use _builddir instead)
export SAGE_SRC="$PWD/spkg/build/sage-%{version}"
export SAGE_FORTRAN=%{_bindir}/gfortran
export SAGE_FORTRAN_LIB=`gfortran --print-file-name=libgfortran.so`
export DESTDIR=%{buildroot}
# Use file in /tmp because there are issues with long pathnames
export DOT_SAGE=/tmp/sage$$
mkdir -p $DOT_SAGE/tmp
# match system packages as sagemath packages
mkdir -p $SAGE_ROOT $SAGE_LOCAL #%{buildroot}%{SAGE_SRC}
ln -sf %{_libdir} $SAGE_LOCAL/lib
ln -sf %{_includedir} $SAGE_LOCAL/include
ln -sf %{_datadir} $SAGE_LOCAL/share
#ln -sf $SAGE_SRC/sage %{buildroot}%{SAGE_SRC}/sage
export PATH=%{buildroot}%{_bindir}:$PATH
export PYTHONPATH=%{buildroot}%{python_sitearch}:$PYTHONPATH
#------------------------------------------------------------------------
pushd spkg/build/sage-%{version}
pushd c_lib
# scons ignores most environment variables
# and does not have soname support
sed -e 's|@@includedir@@|%{_includedir}|g' \
-e 's|@@libdir@@|%{_libdir}|g' \
-e 's|@@optflags@@|%{optflags}|g' \
-e 's|@@__global_ldflags@@|%{__global_ldflags}|g' \
-i SConstruct
CXX=g++ UNAME=Linux SAGE64=auto scons
ln -s libcsage.so.0 libcsage.so
popd
pushd sage/libs/mpmath
dos2unix ext_impl.pxd ext_libmp.pyx ext_main.pxd ext_main.pyx
popd
python ./setup.py build
popd
#------------------------------------------------------------------------
pushd spkg/build/%{sagenb_pkg}/src/sagenb
python ./setup.py build
popd
#------------------------------------------------------------------------
pushd spkg/build/%{flintqs_pkg}/src
make %{?_smpflags} CPP="g++ %{optflags} -fPIC"
popd
pushd spkg/build/%{rubiks_pkg}/src
make %{?_smp_mflags} CC="gcc -fPIC" CXX="g++ -fPIC" CFLAGS="%{optflags}" CXXFLAGS="%{optflags}"
popd
# last build command
rm -fr $DOT_SAGE
########################################################################
%install
export SAGE_ROOT=%{buildroot}%{SAGE_ROOT}
export SAGE_LOCAL=%{buildroot}%{SAGE_LOCAL}
export SAGE_SRC=%{buildroot}%{SAGE_SRC}
export SAGE_SHARE=%{buildroot}%{SAGE_SHARE}
export SAGE_EXTCODE=%{buildroot}%{SAGE_EXTCODE}
export SAGE_DOC=%{buildroot}%{SAGE_DOC}
export SAGE_PYTHONPATH=%{buildroot}%{SAGE_PYTHONPATH}
export LD_LIBRARY_PATH=%{buildroot}%{_libdir}:$LD_LIBRARY_PATH
export DESTDIR=%{buildroot}
export DOT_SAGE=/tmp/sage$$
mkdir -p $DOT_SAGE/tmp
export PATH=%{buildroot}%{_bindir}:$PATH
export PYTHONPATH=%{buildroot}%{python_sitearch}:$PYTHONPATH
#------------------------------------------------------------------------
mkdir -p %{buildroot}%{_bindir}
mkdir -p %{buildroot}%{_libdir}
mkdir -p $SAGE_PYTHONPATH
rm -fr $SAGE_LOCAL/{include,lib,share,notebook}
mkdir -p $SAGE_SHARE $SAGE_DOC $SAGE_LOCAL/bin $SAGE_SRC
ln -sf $PWD/spkg/build/sage-%{version}/sage $SAGE_SRC/sage
ln -sf %{_libdir} $SAGE_LOCAL/lib
ln -sf %{_includedir} $SAGE_LOCAL/include
ln -sf %{_datadir} $SAGE_LOCAL/share
#------------------------------------------------------------------------
pushd spkg/build/sage-%{version}
python setup.py install --root=%{buildroot}
cp -fa c_lib/libcsage.so.0 %{buildroot}%{_libdir}
ln -sf libcsage.so.0 %{buildroot}%{_libdir}/libcsage.so
pushd sage
# install sage notebook templates
cp -fa server/notebook/templates %{buildroot}%{python_sitearch}/sage/server/notebook
popd
# install documentation sources
rm -fr $SAGE_DOC/{common,en,fr}
cp -far doc/{common,de,en,fr,pt,ru,tr} $SAGE_DOC
popd
#------------------------------------------------------------------------
pushd spkg/build/%{sagenb_pkg}/src/sagenb
rm -f %{buildroot}%{python_sitearch}/sagenb/data/sage3d/sage3d
python setup.py install --root=%{buildroot} --install-purelib=%{python_sitearch}
install -p -m0755 %{SOURCE5} $SAGE_LOCAL/bin/testjava.sh
# jmol
rm -fr %{buildroot}%{python_sitearch}/sagenb/data/jmol
mkdir -p %{buildroot}%{python_sitearch}/sagenb/data/jmol/appletweb
pushd %{buildroot}%{python_sitearch}/sagenb/data/jmol
cp -fa %{SOURCE3} %{SOURCE4} appletweb
popd
# sage3d
rm -f %{buildroot}%{_bindir}/sage3d
%if %{with_sage3d}
ln -sf %{SAGE_LOCAL}/bin/sage3d %{buildroot}%{python_sitearch}/sagenb/data/sage3d/sage3d
%endif
# flask stuff not installed
cp -ar flask_version %{buildroot}%{python_sitearch}/sagenb
ln -sf %{python_sitearch}/sagenb %{buildroot}%{SAGE_SRC}/sagenb
popd
#------------------------------------------------------------------------
%if %{with_sage_pexpect}
pushd spkg/build/%{pexpect_pkg}/src
cp -fa {ANSI,FSM,pexpect,pxssh,screen}.py $SAGE_PYTHONPATH
popd
%endif
#------------------------------------------------------------------------
cp -fa COPYING.txt $SAGE_ROOT
pushd spkg/build/sage_scripts-%{version}
mkdir -p $SAGE_LOCAL/bin
cp -fa sage-* $SAGE_LOCAL/bin
pushd $SAGE_LOCAL/bin
ln -sf %{_bindir}/python sage.bin
ln -sf %{_bindir}/gp sage_pari
ln -sf %{_bindir}/gap gap_stamp
ln -sf %{_bindir}/gmp-ecm ecm
popd
popd
install -p -m755 spkg/bin/sage $SAGE_LOCAL/bin
#------------------------------------------------------------------------
pushd spkg/build/%{flintqs_pkg}/src
cp -fa QuadraticSieve $SAGE_LOCAL/bin
popd
pushd spkg/build/%{rubiks_pkg}/src
cp -fa \
reid/optimal \
dietz/solver/cubex \
dietz/mcube/mcube \
dietz/cu2/cu2 \
dik/dikcube \
dik/size222 \
$SAGE_LOCAL/bin
popd
#------------------------------------------------------------------------
pushd $SAGE_LOCAL/bin/
for file in \
sage-apply-ticket \
sage-bdist \
sage-build \
sage-clone \
sage-combinat \
sage-crap \
sage-list-experimental \
sage-list-optional \
sage-list-packages \
sage-list-standard \
sage-location \
sage-make_devel_packages \
sage-omega \
sage-pkg \
sage-pull \
sage-push \
sage-pypkg-location \
sage-README-osx.txt \
sage-rebaseall.bat \
sage-rebaseall.sh \
sage-rebase.bat \
sage-rebase.sh \
sage-rsyncdist \
sage-sdist \
sage-spkg-install \
sage-startuptime.py \
sage-sync-build.py \
sage-test-import \
sage-update \
sage-update-build \
sage-upgrade \
spkg-install; do
rm -f $file
done
popd
#------------------------------------------------------------------------
pushd spkg/build/%{conway_polynomials_pkg}
%__python2 ./spkg-install
popd
#------------------------------------------------------------------------
pushd spkg/build/%{elliptic_curves_pkg}
%__python2 ./spkg-install
popd
#------------------------------------------------------------------------
pushd spkg/build/extcode-%{version}
mkdir -p $SAGE_EXTCODE
for dir in \
gap \
genus2reduction \
gnuplot \
images \
kash \
macaulay2 \
magma \
maple \
matlab \
mathematica \
maxima \
MuPAD \
mwrank \
octave \
QEPCAD \
scilab \
singular \
sobj; do
COUNT=`find $dir -type f | wc -l `
if $COUNT -gt 0 ]; then
cp -far $dir $SAGE_EXTCODE
fi
cp -far pari $SAGE_EXTCODE
done
cp -fa %{SOURCE1} $SAGE_EXTCODE/pari
popd
#------------------------------------------------------------------------
pushd spkg/build/%{graphs_pkg}
mkdir -p $SAGE_SHARE/graphs
cp -fa src/* $SAGE_SHARE/graphs
popd
#------------------------------------------------------------------------
pushd spkg/build/%{polytopes_db_pkg}
mkdir -p $SAGE_SHARE/reflexive_polytopes
cp -fa src/* $SAGE_SHARE/reflexive_polytopes
popd
#------------------------------------------------------------------------
pushd spkg/build/%{sagetex_pkg}/src
python setup.py install --root=%{buildroot} --install-purelib=%{python_sitearch}
install -p -m 0644 -D %{SOURCE2} \
%{buildroot}%{_datadir}/texmf/tex/generic/sagetex/makecmds.sty
mv %{buildroot}%{_docdir}/{sagetex,%{sagetex_pkg}}
mv %{buildroot}%{_datadir}/texmf/tex/generic/sagetex/CONTRIBUTORS \
%{buildroot}%{_docdir}/%{sagetex_pkg}
for file in PKG-INFO README; do
install -p -m 0644 $file %{buildroot}%{_docdir}/%{sagetex_pkg}/$file
done
popd
#------------------------------------------------------------------------
cat > %{buildroot}%{_bindir}/sage << EOF
#!/bin/sh
export CUR=\`pwd\`
##export DOT_SAGE="\$HOME/.sage"
export DOT_SAGENB="\$DOT_SAGE"
mkdir -p \$DOT_SAGE/{maxima,sympow,tmp}
export SAGE_TESTDIR=\$DOT_SAGE/tmp
export SAGE_ROOT="$SAGE_ROOT"
export SAGE_LOCAL="$SAGE_LOCAL"
export SAGE_SHARE="$SAGE_SHARE"
export SAGE_EXTCODE="$SAGE_EXTCODE"
export SAGE_SRC="$SAGE_SRC"
##export SAGE_DOC="$SAGE_DOC"
module load 4ti2-%{_arch}
%if %{have_lrcalc}
module load lrcalc-%{_arch}
%endif
module load surf-geometry-%{_arch}
export PATH=$SAGE_LOCAL/bin:\$PATH
export SINGULARPATH=%{_libdir}/Singular/LIB
export SINGULAR_BIN_DIR=%{_libdir}/Singular
##export PYTHONPATH="$SAGE_PYTHONPATH:\$SAGE_LOCAL/bin"
export SAGE_CBLAS=cblas
export SAGE_FORTRAN=%{_bindir}/gfortran
export SAGE_FORTRAN_LIB=\`gfortran --print-file-name=libgfortran.so\`
export SYMPOW_DIR="\$DOT_SAGE/sympow"
export LC_MESSAGES=C
export LC_NUMERIC=C
MALLOC_CHECK_=1 $SAGE_LOCAL/bin/sage "\$@"
EOF
#------------------------------------------------------------------------
chmod +x %{buildroot}%{_bindir}/sage
#------------------------------------------------------------------------
%if %{with_sage3d}
cat > %{buildroot}%{SAGE_LOCAL}/bin/sage3d << EOF
#!/bin/sh
java -classpath %{SAGE_SRC}/sage/sagenb/data/sage3d/lib/sage3d.jar:%{_javadir}/j3dcore.jar:%{_javadir}/vecmath.jar:%{_javadir}/j3dutils.jar org.sagemath.sage3d.ObjectViewerApp "\$1"
EOF
chmod +x %{buildroot}%{SAGE_LOCAL}/bin/sage3d
%endif
#------------------------------------------------------------------------
# adjust cython interface:
# o link with proper atlas
# o install csage headers
# o install .pxi and .pxd files
pushd spkg/build/sage-%{version}
# make atlas/blas available to compiled sources
perl -pi -e \
's|^(extra_link_args =).*|$1 "-L%{_libdir}/atlas"]|;' \
%{buildroot}%{python_sitearch}/sage/misc/cython.py
# make csage headers available
mkdir -p %{buildroot}%{_includedir}/csage
cp -fa c_lib/include/* %{buildroot}%{_includedir}/csage
for f in `find sage \( -name \*.pxi -o -name \*.pxd -o -name \*.pyx \)`; do
install -p -D -m 0644 $f %{buildroot}%{python_sitearch}/$f
done
# need this or will not "find" the files in the directory, and
# fail to link with gmp
touch %{buildroot}%{python_sitearch}/sage/libs/gmp/__init__.py
popd
#------------------------------------------------------------------------
%if %{with_sage_pexpect}
cp -f $SAGE_PYTHONPATH/{ANSI,FSM,pexpect,pxssh,screen}.py %{buildroot}%{python_sitearch}
%endif
# Build documentation, using %#{buildroot} environment
pushd spkg/build/sage-%{version}/doc
export SAGE_DOC=`pwd`
export PATH=%{buildroot}%{_bindir}:$SAGE_LOCAL/bin:$PATH
export SINGULARPATH=%{_libdir}/Singular/LIB
export SINGULAR_BIN_DIR=%{_libdir}/Singular
export LD_LIBRARY_PATH=%{buildroot}%{_libdir}:%{_libdir}/atlas:$LD_LIBRARY_PATH
export PYTHONPATH=%{buildroot}%{python_sitearch}:$SAGE_PYTHONPATH:$SAGE_DOC
%if %{with_sphinx_hack}
cp -far %{python_sitelib}/sphinx %{buildroot}%{python_sitearch}
sed -i "s|\(source.startswith('>>>')\)|\1 or source.startswith('sage: ')|" \
%{buildroot}%{python_sitearch}/sphinx/highlighting.py
%endif
# there we go
ln -sf %{buildroot}%{SAGE_DOC} $SAGE_SRC/doc
python common/builder.py all html
export SAGE_DOC=%{buildroot}%{SAGE_DOC}
cp -far output $SAGE_DOC
# should not be required and encodes buildroot
rm -fr $SAGE_DOC/output/doctrees
sed -e 's|%{buildroot}||g' -i $SAGE_DOC/output/html/en/reference/sage/misc/hg.html
popd
%if %{with_check}
export SAGE_TIMEOUT=%{SAGE_TIMEOUT}
export SAGE_TIMEOUT_LONG=%{SAGE_TIMEOUT_LONG}
sage -testall --verbose || :
install -p -m644 $DOT_SAGE/tmp/test.log $SAGE_DOC/test.log
# remove buildroot references from test.log
sed -i 's|%{buildroot}||g' $SAGE_DOC/test.log
%endif
%if %{with_sage_pexpect}
rm -f %{buildroot}%{python_sitearch}/{ANSI,FSM,pexpect,pxssh,screen}.py{,c}
%endif
%if %{with_sphinx_hack}
rm -fr %{buildroot}%{python_sitearch}/sphinx
%endif
# Script was used to build documentation
perl -pi -e 's|%{buildroot}||g;s|^##||g;' %{buildroot}%{_bindir}/sage
# More wrong buildroot references
perl -pi -e 's|%{buildroot}||g;' \
-e "s|$PWD/spkg/build/sage-%{version}/doc|%{SAGE_DOC}|g;" \
%{buildroot}%{SAGE_DOC}/output/html/en/reference/todolist.html \
%{buildroot}%{SAGE_DOC}/output/html/en/reference/misc/sage/misc/hg.html
#------------------------------------------------------------------------
# Fix links
rm -fr $SAGE_SRC/sage $SAGE_EXTCODE/sage $SAGE_ROOT/doc $SAGE_SRC/doc
rm -fr $SAGE_ROOT/share $SAGE_ROOT/devel
ln -sf %{python_sitearch}/sage $SAGE_SRC/sage
ln -sf %{python_sitearch} $SAGE_EXTCODE/sage
ln -sf %{SAGE_DOC} $SAGE_ROOT/doc
ln -sf %{SAGE_DOC} $SAGE_SRC/doc
ln -sf %{SAGE_SHARE} $SAGE_ROOT/share
# compat devel symlink
ln -sf src $SAGE_ROOT/devel
# Install menu and icons
pushd spkg/build/%{sagenb_pkg}/src/sagenb/sagenb/data
install -p -m644 -D sage/images/icon32x32.png %{buildroot}%{_datadir}/pixmaps/%{name}.png
popd
mkdir -p %{buildroot}%{_datadir}/applications
cat > %{buildroot}%{_datadir}/applications/%{name}.desktop << EOF
[Desktop Entry]
Name=Sagemath
Comment=A free open-source mathematics software system
Exec=sage
Icon=%{name}
Terminal=true
Type=Application
Categories=Science;Math;
EOF
desktop-file-validate %{buildroot}%{_datadir}/applications/%{name}.desktop
# Fix permissions
find %{buildroot} -name '*.so' | xargs chmod 755
pushd %{buildroot}%{SAGE_LOCAL}/bin
chmod 755 QuadraticSieve
chmod 755 mcube dikcube cu2 size222 cubex optimal
popd
for file in `find %{buildroot} -name \*.py`; do
if head -1 $file | grep -q '^#!'; then
chmod +x $file
fi
done
chmod -x %{buildroot}%{SAGE_DOC}/en/prep/media/Rplot001.png
# Documentation is not rebuilt (also corrects rpmlint warning of hidden file)
find %{buildroot}%{SAGE_DOC} -name .buildinfo -exec rm {} \;
rm -fr %{buildroot}%{SAGE_DOC}/output/inventory
find %{buildroot}%{SAGE_DOC} -type d -name _sources | xargs rm -fr
# remove bundles fonts
rm -r %{buildroot}%{python_sitearch}/sagenb/data/mathjax/fonts
# remove .po files
rm %{buildroot}%{python_sitearch}/sagenb/translations/*/LC_MESSAGES/*.po
%if !%{with_sage3d}
rm -r %{buildroot}%{python_sitearch}/sagenb/data/sage3d
%endif
# remove cache files
rm -r %{buildroot}%{python_sitearch}/sagenb/data/.webassets-cache
# last install command
rm -fr $DOT_SAGE
########################################################################
%post core
/sbin/ldconfig
exit 0
%postun core
/sbin/ldconfig
exit 0
# Use symlinks and a minor patch to the notebook to not bundle jmol
%post notebook
ln -sf %{_javadir}/JmolApplet.jar %{python_sitearch}/sagenb/data/jmol/
ln -sf %{_javadir}/vecmath.jar %{python_sitearch}/sagenb/data/jmol/
exit 0
%postun notebook
if $1 -eq 0 ] ; then
rm -f %{python_sitearch}/sagenb/data/jmol/JmolApplet.jar
rm -f %{python_sitearch}/sagenb/data/jmol/vecmath.jar
rmdir %{python_sitearch}/sagenb/data/jmol &&
rmdir %{python_sitearch}/sagenb/data &&
rmdir %{python_sitearch}/sagenb
fi
exit 0
%post sagetex
%{_bindir}/mktexlsr
exit 0
%postun sagetex
if $1 -eq 0 ] ; then
%{_bindir}/mktexlsr
fi
exit 0
########################################################################
%files
# GPLv2+
%dir %{SAGE_ROOT}
%doc %{SAGE_ROOT}/COPYING.txt
%dir %{SAGE_LOCAL}
%dir %{SAGE_LOCAL}/bin
%{SAGE_LOCAL}/bin/QuadraticSieve
%{SAGE_LOCAL}/bin/ecm
%{SAGE_LOCAL}/bin/gap_stamp
%{SAGE_LOCAL}/bin/sage*
%{SAGE_LOCAL}/bin/testjava.sh
%{SAGE_LOCAL}/include
%{SAGE_LOCAL}/lib
%{SAGE_LOCAL}/share
%{SAGE_ROOT}/doc
%{SAGE_ROOT}/devel
%{SAGE_ROOT}/share
%dir %{SAGE_SRC}
%{SAGE_SRC}/doc
%{SAGE_SRC}/sage
%dir %{SAGE_PYTHONPATH}
%if %{with_sage_pexpect}
# MIT
%{SAGE_PYTHONPATH}/*.py*
%endif
# GPLv2+
%{_bindir}/sage
%{_datadir}/pixmaps/%{name}.png
%{_datadir}/applications/%{name}.desktop
#------------------------------------------------------------------------
%files core
# GPLv2+
%{_libdir}/libcsage.so.*
%{python_sitearch}/sage
%{python_sitearch}/sage-*.egg-info
#------------------------------------------------------------------------
%files data
%dir %{SAGE_SHARE}
%dir %{SAGE_EXTCODE}
%{SAGE_EXTCODE}/sage
#------------------------------------------------------------------------
%files data-conway_polynomials
# GPLv2+
%{SAGE_SHARE}/conway_polynomials
#------------------------------------------------------------------------
%files data-elliptic_curves
# GPLv2+
%{SAGE_SHARE}/cremona
%{SAGE_SHARE}/ellcurves
#------------------------------------------------------------------------
%files data-extcode
# GPLv2+
%{SAGE_EXTCODE}/gap
%{SAGE_EXTCODE}/images
%{SAGE_EXTCODE}/magma
%{SAGE_EXTCODE}/maxima
%{SAGE_EXTCODE}/mwrank
%{SAGE_EXTCODE}/pari
%{SAGE_EXTCODE}/singular
#------------------------------------------------------------------------
%files data-graphs
# GPLv2+
%{SAGE_SHARE}/graphs
#------------------------------------------------------------------------
%files data-polytopes_db
# GPL+
%{SAGE_SHARE}/reflexive_polytopes
#------------------------------------------------------------------------
%files devel
# GPLv2+
%{_includedir}/csage
%{_libdir}/libcsage.so
#------------------------------------------------------------------------
%files doc
# GPLv2+
%dir %{SAGE_DOC}
%{SAGE_DOC}/common
%dir %{SAGE_DOC}/output
%dir %{SAGE_DOC}/output/html
#------------------------------------------------------------------------
%files doc-de
# GPLv2+
%{SAGE_DOC}/de
%{SAGE_DOC}/output/html/de
#------------------------------------------------------------------------
%files doc-en
# GPLv2+
%{SAGE_DOC}/en
%{SAGE_DOC}/output/html/en
#------------------------------------------------------------------------
%files doc-fr
# GPLv2+
%{SAGE_DOC}/fr
%{SAGE_DOC}/output/html/fr
#------------------------------------------------------------------------
%files doc-pt
# GPLv2+
%{SAGE_DOC}/pt
%{SAGE_DOC}/output/html/pt
#------------------------------------------------------------------------
%files doc-ru
# GPLv2+
%{SAGE_DOC}/ru
%{SAGE_DOC}/output/html/ru
#------------------------------------------------------------------------
%files doc-tr
# GPLv2+
%{SAGE_DOC}/tr
%{SAGE_DOC}/output/html/tr
#------------------------------------------------------------------------
%files notebook
# GPLv2+
%{SAGE_SRC}/sagenb
%dir %{python_sitearch}/sagenb
%{python_sitearch}/sagenb/*.py*
%{python_sitearch}/sagenb-*.egg-info
%dir %{python_sitearch}/sagenb/data
# BSD
%{python_sitearch}/sagenb/data/codemirror
# MIT
%{python_sitearch}/sagenb/data/graph_editor
# ASL 2.0
%{python_sitearch}/sagenb/data/highlight
# LGPLv2+
%{python_sitearch}/sagenb/data/jmol
# (MIT or GPLv2) and (MIT and BSD and GPL)
%{python_sitearch}/sagenb/data/jquery
# (MIT or GPLv2) and (MIT and BSD and GPL)
%{python_sitearch}/sagenb/data/jqueryui
# Public Domain
%{python_sitearch}/sagenb/data/json
# ASL 2.0
%{python_sitearch}/sagenb/data/mathjax
# Empty (do not run doctests flag file)
%{python_sitearch}/sagenb/data/nodoctest.py*
# BSD
%{python_sitearch}/sagenb/data/openid-realselector
# GPLv2+
%{python_sitearch}/sagenb/data/sage
%if %{with_sage3d}
# GPLv2+
%{python_sitearch}/sagenb/data/sage3d
%endif
# LGPLv2+
%{python_sitearch}/sagenb/data/tiny_mce
# Auto generated files
%{python_sitearch}/sagenb/data/webassets_generated
# LGPLv2+
%{python_sitearch}/sagenb/data/zorn
# GPLv2+
%{python_sitearch}/sagenb/flask_version
# GPLv2+
%{python_sitearch}/sagenb/interfaces
# GPLv2+
%{python_sitearch}/sagenb/misc
# GPLv2+
%{python_sitearch}/sagenb/notebook
# GPLv2+
%{python_sitearch}/sagenb/simple
# GPLv2+
%{python_sitearch}/sagenb/storage
# GPLv2+
%dir %{python_sitearch}/sagenb/testing
%{python_sitearch}/sagenb/testing/*.py*
%{python_sitearch}/sagenb/testing/tests
# ASL 2.0
%{python_sitearch}/sagenb/testing/selenium
# GPLv2+
%dir %{python_sitearch}/sagenb/translations
%lang(cs_CZ) %{python_sitearch}/sagenb/translations/cs_CZ
%lang(de_AT) %{python_sitearch}/sagenb/translations/de_AT
%lang(pt_BR) %{python_sitearch}/sagenb/translations/pt_BR
%lang(ru_RU) %{python_sitearch}/sagenb/translations/ru_RU
#------------------------------------------------------------------------
%files rubiks
# GPL+
%{SAGE_LOCAL}/bin/optimal
# MIT
%{SAGE_LOCAL}/bin/dikcube
%{SAGE_LOCAL}/bin/size222
# GPL+
%{SAGE_LOCAL}/bin/cu2
%{SAGE_LOCAL}/bin/cubex
%{SAGE_LOCAL}/bin/mcube
#------------------------------------------------------------------------
%files sagetex
# GPLv2+
%{python_sitearch}/sagetex*
%{_datadir}/texmf/tex/generic/sagetex
%doc %{_docdir}/%{sagetex_pkg}